PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03663 (766 amino acids)

SeqID: CCNA_03663 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03663
MGNADMSDAERKTFTDAEALAFHRYPTPGKIAIVPTKPMATQRDLSLAYSPGVAVPVHAI
AADPDMAYEYTSKGNLVAVISNGTAILGLGDLGALASKPVMEGKSVLFKRFGDVDSIDIE
VTTKDPDEIITVVKNIGVTFGGINLEDIKSPECFRIETELQELLDIPVFHDDQHGTAIIC
AAGLINACHITGKKIEDVKVVLNGPGAAGIASLELIKAMGVRAENCIAVDSKGVLYRGRT
EGMNQWKSAHAVETDKRTLAEAVVGADVLLGLSAKGAFTPEMIASMAPNPVIFAMANPDP
EITPEEVKRVRKDAIMGTGRSDYPNQVNNVLGFPYIFRGALDVRARRVNHEMKIACAQAL
AMLAREDVPDEVAAAYHGRQLKFGPDYIIPSAFDPRLIWYVPPFVAQAAMDTGVARKPIA
DMDAYRAGLAQRLDPTAGFLQKISGSVLANPKRIVFAEGEDPSVIRAAYAYQSGGFGKAI
LCGRENLVHENMKLVGLDPDTAGLEIINARLSDRNPDYVDALYARLQRQGYLKRDVQRLI
NQDRNSFAASMVTLGEADGMVTGVTRSFDQALEEVLRVVDPAPGGRIMGMSVVLAKGRTI
FVADTNVTELPEAEELVEIACEAARAVRRLGFKPRVAFMSYSTFGNPMGLRSEKVREAVA
MLDEMEVDFEYEGEMPPELALDPEKRANYPFMRLTDSANILIMPAIHAASISTKLVQSLG
GATVIGPVLLGLSKSVQIAPLSASVSKILNMAMMAAYDQPVDDGEG