PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03746 (391 amino acids)

SeqID: CCNA_03746 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600583: probable peptidic bond hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03746
MVASSEALSARAIDILAKLVAFDTTSRRSNLALIEWVEQYLAELNVPTRRVPNADGTKSN
LMAMIGPAVEGGVVLSGHTDVVPVDGQPWSTDPWTLTERDGRLYGRGTCDMKGFLALALA
AAPDLAQANLRKPVHLAFSYDEEVGCLGAPDMIDVIAREVPRPALVVVGEPTDMVAVRAH
KGIASFKVTVTGREAHSSLTHLGVSANMVAIKLMAMLVGLSEKLEREADPNSPFTPKGAT
LTIGQVNGGTAVNILARECVFIFDLRTPAGMDPVALLSDFFAMASALDAQIKAKAPEGGV
KVERRSLTPAFAPEEDGVAEAFARKLAGDNGPARVVPYAAEAGQFQGAGFSTVICGPGSI
DQAHQPNEYVEISQMQRGGAFMRRLVEDLST