PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03758 (392 amino acids)

SeqID: CCNA_03758 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03758
MTDWMDAEQVLERLGIRPQTLYAYVSRGRIEAAAHPSDPRRSLYRASDVTALARKKARGR
RVADVAAEAIAWGEPVLPSAITTVSGGKLWYRGEDAAGLADQGLTLENVARLLRGGHGAA
LKASSRPPPPATDSARSRMFLTLAERAGREPPARGRAPLALAMEAADLLDAIVDAATGQA
GDGPAHQRFAHAWNLTADGADLVRRALVLMADHELNASTFAARVAASTGASLSAACLAGL
SALSGPLHGGMAARVEALVEEADRRDAARAVSSRLEQGASLPGFDHPLYPGGDPRAAALL
ARFEPPEPLTALWQATRAATGLAPNIDFALVALARGLALPQDAPFILFATARSAGWTAHA
IEQLQTGRLIRPRARYIGTVPSAAGYSPSSSS