PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03770 (320 amino acids)

SeqID: CCNA_03770 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506808: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03770
MARAKIALIGAGMIGGTLAHIAAREELGDVILFDIAEGTPQGKALDIAEASAVFGKDVAL
KGANDYADIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHAPNAFVICIT
NPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDIHAWTLGGHGDDM
VPMVRHSTVGGLPLPELVKQGWLSQDKLDAIVERTRKGGGEIVALLKTGSAFYAPAESAI
AMATSYLKDKKRVLPCATYLTGQYGLNDLYVGVPVVIGAGGAEKIVEFETNDDEKAMFAK
SVESVKGLMEACKAIDSSLV