PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03781 (895 amino acids)

SeqID: CCNA_03781 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03781
MASVDSLKARRELKVGKQSYVYYSLRAAEEAGLADVSSLPVSMKVLLENLLRNEDGVSVN
EDDLKAVAAWLNNKGSVEHEISFRPARVLMQDFTGVPAVVDLAAMRDAMVALGADPAKIN
PLNPVDLVIDHSVMVDNFGNPKAYDDNVKREYERNIERYRFLRWGSSAFNNFRVVPPGTG
ICHQVNLEYLAQTVWTNTVDGAEVAYPDTVVGTDSHTTMVNGLAVLGWGVGGIEAEAAML
GQPIPMLIPEVIGFKLTGAMPEGATATDLVLTVTQMLRKKGVVGKFVEFYGDALANLTLE
DQATIANMAPEYGATCGFFPISAATIAYLKGTGRAAERVALVEAYAKEQGLWWEPGVAEP
TFTDTLELDLSTVLPSLAGPKRPQDRVLLSDAAAKFAESLAGEFGKAENPELRAPVEGED
FDVGHGDVVIAAITSCTNTSNPSVLIAAGLLAKNAVAKGLKAKPWVKTSLAPGSQVVTDY
LAKAGLTKHLDALGFNLVGYGCTTCIGNSGPLPEAISKTINDNDLVACSVLSGNRNFEGR
VNPDVRANYLASPPLVVAYALAGSLKIDLATQPIGQDKKGNDVFLKDIWPSNEDIAALQR
KAINEKMFATRYGDVFKGDKNWQGIKVTGGQTYAWEADSTYVQNPPYFPNMSMTPAPVTD
IVEARILAVFGDSITTDHISPAGSIKASSPAGKFLIDNGVEPVDFNGYGARRGNHQVMMR
GTFANIRIRNRITPDIEGGVTKHFPTGEVMSIYDAAMKYQEEGRPAVVFGGKEYGTGSSR
DWAAKGTKLLGVRAVICESFERIHRSNLVGMGVLPLQFVQDGWQKLELTGEEIVSIRGLT
DLAPRKQLIVELYRPTDGRIARFPVRCRIDTPTELEYFKNGGVLNYVLRNLAKAD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory