PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0130 (758 amino acids)

SeqID: Dsui_0130 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0130
MDNKQLREAALYYHRHPKPGKISVQPTKQLTNQYDLSMAYSPGVAAACEEIVANPAEVST
VTARANLVGVITNGTAVLGLGNIGPLAAKPVMEGKGVLFKKFANIDVFDLEIEQRDPDML
IETIASLEPTFGGINLEDIKAPECFYIEKKLRERMKIPVFHDDQHGTAIVVGAAILNGLT
YLGKDLKQIKLVTSGAGAAALACLDLLVMLGVPVENIWVTDIKGVVYEGRVEEMDEIKAR
YAKKTDARTLGEVIEGADVFLGLSAGGVLKQDMVAKMAKNPLILALANPTPEILPDLVKE
VRDDAIIATGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLAAVKAIAELARAEQS
EIVAAAYGEKVSGFGPEYLIPKPFDPRLIVKIAPAVARAAMDSGVATRPITDWPAYLQSL
NEFVYHSGLIMKPVFAQAKAAPKRIIYAEGEDERVLRAVQVVVEERIARPILIGRPAVIN
AKVEAAGLRIRESLDFDILDPDNNPRYDEFWQEYHRLMERRGVSLDYAKREVRRRHTLCG
SLAVRLGMADGLICGTFGRHQLHRFYVKHVIGTNDRSSSYYTLNLLMLPGRTVFIGDTYV
NYDPSAEQLAEMTLLAADEIRRFGITPKVALLSHSTFGTEDTPTSLKMRKVLELLAEQAP
ELEAEGEMHGDAALDEQIRLQGFPNSRLKGQANLLVMPTLDAANISFNLLKTAAGDNLTV
GPILIGTARPVHILTPTATVRRIVNMTALTVVDAGTER