PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0219 (491 amino acids)

SeqID: Dsui_0219 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0219
MTETEFNALAAQGYNRIPVTLETFADLDTPLSIYLKLANGPYTYLLESVQGGERFGRYSI
IGLASPTRIAVYGHQVMVLTGQRIAERENDTNPLEFIESYQKRFRVAPYAGLPRFCGGLV
GCFGYDTVRYVETRLTKSAKHDELGTPDILLLLSEEIAVVDNLSGKLTLVVYAEPGFPGA
FQKARARLKELLAQLRTPAPIPEEKPATSQPAVSIFGEAPFKQAVAKAKEYITEGDIMQV
VLSQRMTKPFSASPLSLYRALRTLNPSPYMYYFDFEDFHVVGASPEILTRLEGDTVTVRP
IAGTRKRGATPEEDAALAEDLLADQKEIAEHVQLLDLGRNDVGRVAQTGSVKLTERMSIE
RYSHVMHIVSNVEGKLQAGLSALDVLKAAFPAGTLSGAPKVRAMEIIDELEPVKRGIYGG
AIGYLGFNGDMDLAIAIRTAVIKDGQLHVQAGAGIVADSDPTSEWQETQNKARAVLRAAE
MAENGLDTRFE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory