PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0325 (432 amino acids)

SeqID: Dsui_0325 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135759: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0325
MAQQQAFEPVYVVDGARTPFLKAKNGPGPFSAADLAVQAGRALLARQPFAPEDLDEVVLG
CASPSPDEVNIGRVAALRLGCGNKVTGWTVMRNCASGMQALDSAMANIQSGRSELVLAGG
VDALSRAPLLYNDAMVLWFAGMMQMKTLGQKAGHFLKLRPSVLLNPVIGLMKGLTDPVVG
LLMGQTAENLAWRFGISREEMDAFSVRSHQRVMAGRAKQAFGEIVPLVGNDGTVYAEDDG
VRVDASMDGMKKLKPFFDKKYGRVTPANSSQITDGGAWLLLASESAVKRWKLEPLGRIVD
AQWAGLDPSQMGLGPVHAVTPILQRHGLGLNDVDLMEINEAFAAQVLGCLKAWEDDAYCR
EELGLPGALGSLDQDKLNVDGGAVAQGHPVGASGARIVLHLLHALKARGGKRGVASICIG
GGQGGAMLVETC

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory