PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0379 (1183 amino acids)

SeqID: Dsui_0379 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0379
MSDLSLHVPKELASASLDDKYTTLSGRAFLTGTQALIRLPMLQRLRDQAQGLNTAGFISG
YRGSPLGGLDQGLWKAQKYLAENHITFQPGVNEDLAATAVWGSQQVNLFPGAKYDGVFAL
WYGKGPGVDRSGDVFRHANAAGSSRHGGVLVVAGDDHAAKSSTLPHQTEHVFKAVMMPVL
YPANVQEYLEYGLHGWAMSRYSGCWVAFKALADTVETSASVWVDPMALDIRLPDDFELPA
DGLNIRWPDPPLVQEARLTHFKLYAALAYARANRLNRIVIDSPAPRLGIITAGKSYLDVM
QALDELGIDQQLAAQIGIRLYKVGMVWPLESEGVRQFAEGLDEILVVEEKRQMLEYQLKE
ELYNWREDVRPRVVGKFDEKGEWALLPDGKGHLAHGDWLLPAAGELSVAQIARAIASRIE
RHFTSPAIKARLDLIEAKQKALQTPLILTQRTPHFCSGCPHNTSTRVPEGSRAVAGIGCH
YMVTWMDRSTSTFTHMGGEGVTWVGQAPFTEEKHIFANLGDGTYFHSGLLAIRQSVAAKT
NITYKILYNDAVAMTGGQPVDGILSVPRITRQLEAEGVGRMVIVTDEPEKYAEVTDLAPN
VPVRHRDELDAVQRELREIPGTTILIYDQTCATEKRRRRKRGKLADVDRRVFINEAVCEG
CGDCSVQSNCLSVIPVETDFGRKRAIDQSNCNKDFSCLKGFCPSFVTLEGAKLKKGQALA
MDAQDWPPLPEPVLPPTARPYNLLVTGVGGTGVVTLGALIGMAAHLDGKGVSVLDMTGLA
QKYGAVFTHLRFADRPEDIHAARIATGEADAILGGDVVVTAGNEALSKMLEGRTRAVVNC
TETPTAEFTRNPDWQFPLARMQQTVTATVGADHAWFLDAQALATALMGDALYTNMFLLGY
AWQKGLVPVSLPALGRAIELNGTAVAANLQALDWGRRAAVDEARVRQLATPAADTPPPRP
DAALEEVLALREQELTDYQDAALARRYRQRIEALRQAEAPLDPALPVTLAAARNYFKVLA
IKDEYEVARLHTRPEFFARLRQTFAGEPGKDYAVHVHLAPPLWARPDPRSGQIRKRQYGP
WMLGALKLLARLKFLRGTALDVFGHTAERRMERALQAGYEADLERILEALAAGSAHPALL
ELARLPESVRGYGHVKAASAEKARQQRQELLRKLEGGGAAPAV