PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0635 (299 amino acids)

SeqID: Dsui_0635 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596539: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0635
MRKTLTLAAAAVIGSALCAAPVLAQESPTLKKIKDTGSITLGHRESSIPFSYYDDKQQVI
GYSHEMMLKAVDAIKAELKLAKLDVKLMPVTSANRITLLQNGTVDMECGSTTNNLERQKQ
VGFSTSIFVIGTRLMAKKDAGVKDFPDLAGKNVVTTAGTTSERLIRKMNEEKQMKMNIIS
AKDHGESFLTLESGRAVAFMMDDALLYGEMAKAKRPGDWVVVGTAQSKEAYGCMLRKDDA
GFKKVVDAALTKAMTSGEAEKIYNKWFMNPIPPKGLNLNMPLSDDMKALYKAPNDKAYE