PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0842 (593 amino acids)

SeqID: Dsui_0842 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0842
MMSAKLSPARAILAAFLLFLATGPLWLPEFHVTLLNYIGLYGLVALGLVLLTGVGGLTSF
GQAAFVGLGAYTTAYLTTAYGVSPWLTLLAGLGLTLAFALCLGFITLRLSGHFLPLGTIA
WGISLYFLFGNLEWLGGHTGMTGIPAVSLFGLELKDSRSFFYLIWVVLLGAMLATRNLLD
SREGRAIRALKGGTVMAEAMGVNTARSKIVIFTVAALYACVSGWLYAHLQRFVNPTPFSI
NQGVEFLFMAVIGGVAHVWGAVVGAGLITVLKQWLQDLLPELLGQSGNFEVIVFGLMMIF
VLHRARNGLWPAIARLVPAPKQERHAVAAAEPLPRRQMPAAGTVLLQAEGVTKRFGGLVA
NKDMALTVQAGEVMALIGPNGAGKSTMFNCISGVNPPSEGRISFLGQPVAGLEARDIARL
GLSRTFQHVRLLSGMTVLENVAIGAHLRGRHNYLAAGLRLERAEEARLLAEAARQIERVG
LAEHMFDAAGSLALGKQRIIEIARALAADPCLLLLDEPAAGLRYLEKQALAELLRKLRGE
GMGILLVEHDMDFVMGLADRVVVMEFGEKLAEGLPEEIQKNPAVLEAYLGGVE