PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0982 (667 amino acids)

SeqID: Dsui_0982 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0982
MFSKILIANRGEIACRVIKTARRLGIRTVAVYSEADANARHVRLADEAVLLGPAAARESY
LVAEKILDAARRTGAQAIHPGYGFLSENADFAEACAAAGVVFIGPPASAIRAMGSKSAAK
ALMEKAAVPLTPGYHGDNQEPEFLKQQADAIGYPVLIKAAAGGGGKGMRLVDKGEDFIAA
LASCQREARSSFGNDQVLVEKYITRPRHIEIQVFGDSQGNCVYLFERDCSVQRRHQKVLE
EAPAPGMTPERRRQMGEAAVAAAKAVGYVGAGTVEFIANQDGSFYFMEMNTRLQVEHPVT
EMITGQDLVEWQLRVAAGEALPLRQEQLQIRGHALEARIYAEDAGKGFLPSTGRLLHLVP
PAEGLNVRVDTGVEEGDEITPHYDPMIAKLIVWDEDREAALARMRQALADYRVVGVTTNI
DFLSRLVSCPAFAGADLDTGLIERQQDFLFPESPEVPRDVILTATVAELLRERDLAAQQG
RRSGDPWSPWNRRDGWRMNIAARRTVSFRVGETQVDVGVAYAGEDWQLTLRNDTLLVRGR
LLAHDRLAVELEDRRLMASVVAVAEKRHVFLNSGTYVIERHDPLHLVEAGGAQGGGLTAP
MPGKVVALLAQPGPVAKGTPLLILEAMKMEHTITAPKQGNLKGFRYAVGEQVADGAELVD
FAPEAAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory