PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1115 (388 amino acids)

SeqID: Dsui_1115 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1115
MASKPLQGVRILDLTRLLPGPVATLHLADLGADVIKIEDHGAGDYARTMGDGPEGVSVFY
RAVNRNKRGLRLDLKNPEGAALFRRLAAEADVVIESFRPGVMDKLGVGYEALCSLNPRLV
FCAITGYGQSGPLALAAGHDLNYIGYAGILDQIGVDGGQPAIPNLQIGDLLGGAMSAVMG
ILAALFDARRSGQGRFVDVSMSDAALAHNLFPLFALQGGAGVAERGRDMLSGGDAGYGVY
ATADGRYMAVAPLERKFWDLFCDTLGQPRWKARHGATGAEARAMRAELETLFASQPQSYW
TEKFARVDCCVTPVLTVAEALAHPHFQARGMGFQADGITQYGPPVRLSDMPVEPVRPAPA
PGEHGQAILAEFGVTAEELQRLQNLGVV