PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1250 (555 amino acids)

SeqID: Dsui_1250 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1250
MSAFRPKLLDCLPDYDRAQFGRDVSAGLTVGVLALPLAMAFAIASGVDPAAGIWTAIVAG
FIIAALGGSRVQIGGPTGAFIVIVYGIVAQYGLANLLIATMLAGLILIGMGLARLGALIR
FIPVTVVIGFTNGIAVLIFISQIKEFLGLDMEALPAEFFAKMKVLAANLPNTDLPTLALA
SASLVLLVLWNKKVAGKLPLLGKLPGPLAVLIAGTVAQSLLEFPVETIGSRFGGIPQSLP
AFAFPELTLSTLRNLISPAITIALLGAIESLLSARVADSQIDDRHDPNQELLAQGVANVV
APLVGGFAATGAIARTSTNVRAGGRTPVAGMVHALTLLAVVLVAAPLASDVPLATLSAIL
MVVAWNMGEWHEFKELPRYSMNYRAILLSTFFITVVFDLTLAVEIGMVLASLFFIYRMSE
LTKVAPLSLPDWAAGQPVAAYSLYGSLFFGAVGKLQTLLDQHAQGTQVLILDLHQVINLD
TTGLDTLEALQRMLAKRGGCLILAGLNAQPGSLVSRSGFADDVGTDNLVASLAEAWQRAA
ILLPRDEAAGSPSHA