PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1902 (520 amino acids)

SeqID: Dsui_1902 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118589: NADH dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1902
MLDSSIKTQLKAYLEKLVQPIELVASLDDSATAQEMRSLLADIAELSDKVSLREDGQAAR
RPSFGIARAGQSPRIHFAGIPMGHEFTSLVLALLQSGGHPPKVEAEVVEQIKGLDGKFSF
ETFISLSCHNCPDVVQALNTMAVLNPNVEAVMIDGGVFQQEVEERQIMGVPAIYLNGQAF
GSGRMELGEILAKVDTGAAARDAAKLSDKEVFDVLVVGGGPAGAAAAIYAARKGIRTGVV
AERFGGQVLDTLGIENFISVKETEGPKLAMALEQHVREYEVDIMNLQRAAALKPAANGQP
AEVTLANGAVLKSKTVILSTGARWREMNVPGEAEYRTKGVAYCPHCDGPLFKGKRVAVIG
GGNSGVEAAIDLAGIVAHVTLLEFGKEMRADAVLQKKLLSLPNVTVITEAQTTEVTGDGQ
KVNGLKYKDRVSGEEKTVALEGIFVQIGLLPNTDWLKGTVELSDRGEIVINAKGETSAEG
VFAAGDCTTVPYKQIIIAMGEGAKASLSAFDHLIRSSALA