PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2219 (474 amino acids)

SeqID: Dsui_2219 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124106279: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2219
MSKQFDVLVIGGGPGGYVAAIRAAQLGFSVACCESNPYADPKGEPRLGGTCLNVGCIPSK
ALLHTSHLFEEAGHAFAAQGIQVSAPKIDVPTMIGRKTAVVTQLTSGIKGLFKKNKVTQL
NGHGSFVGQGGAGWQVKVGDEVVEAKQVIVATGSKARHLPGIAVDQKIVLDNEGALEQQS
VPKKLAIIGAGVIGLEMGSVWRRLGSEVTILEASPDFLAAADQDVAKEALKLFTKQGLNI
QMGVKLGETKVSKKGVSIAYTDKDGKEQKLDAERLIVSVGRVPNTDGLNAEKIGLKLNER
GQIEVDGHCRTNLPGVWAVGDVVSGPMLAHKAMEEAVMVAELMAGQAGHCNFDTIPWVIY
TSPEIAWVGKTEQQLKADGVAYKAGKIPFLANGRALGMGDPTGFVKMLACAKTDRILGVH
IIGPNASELIAEAVVTMEFGGASEDLARICHAHPTLSEAVHEAALACDKRPLHF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory