PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2925 (630 amino acids)

SeqID: Dsui_2925 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2925
MTSYKEFHRRSIEQPDAFWSEQAQLIDWHKPFDQVCDYSRPPFAKWFVGGQTNLCYNAVD
RHAKTRPNDNALIFISTETDVEKVYSFAELQREVERMAAIYQSLGVKKGDRVLIYMPMIA
EACFAILACARIGAIHSVVFGGFASGSLATRIDDAKPVLIVSSDAGMRGGKAVPYKHLLD
DAINQAEHKPGKVLMVDRGLDKAFNKVEGRDVDYAALRAQFMDAQVPVTWVESSDPSYIL
YTSGTTGKPKGVQRDTGGYAVALASSIKHIYCGKPGETFFSTSDIGWVVGHSYIIYGPLI
GGMATIMYEGTPIRPDAGIWWQIVEKYKVNVMFSAPTAARVLKKHDPAFLHKYDLSSLKH
LFLAGEPLDQPTHEWIMGELKLPVIDNYWQTETGWPMLSTVRGVEDTKIKYGTPSFPVYG
YDVRIFREDGSECDANEKGILGVVPPLPPGCLTTVWGDDERFVNTYFSLFKEPLVYSSYD
WAIKDDEGYHFILGRTDDVINVAGHRLGTREIEEAVQGHPAVAEVAVVGVNDALKGQLPV
AFAVVKDASKIATPELVAALEKEVMKRVDETLGAIARPGRVYFISGLPKTRSGKLLRRSI
QALAEGRDPGDLTTIEDPTALEQIKAALSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory