PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3044 (776 amino acids)

SeqID: Dsui_3044 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 62297831: NADH-quinone oxidoreductase subunit 3 (NADH dehydrogenase I chain 3)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3044
MLEIEIDGKKAEVPDGSTVMDAAQQVGVYIPHFCYHKKLSIAANCRMCLVQVEKAPKPLP
ACATPVTNGMKVFTHSELAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLSVGYGGVK
SRYQEEKRVVFHKDIGPLISMEEMSRCIHCTRCVRFGQEIAGIMELGMANRNFHSEITTF
MARTVDSELSGNAIDLCPVGALTSKPFRYSARTWELQRRKSVSPHDSLGANLVVQVKGNK
VMRVLPRENEEVNECWISDKDRFSYEALNSEERLTKPMVKQGGEWKEVEWNVALDYVAHG
LKDVSREFGGDALGFLLSPHATLEELALAKKLAAGLGCDNVDFRLRQRDFSADGKRAGTP
WLGLKLAEIKDLDGALVVGSFLRKDAALFAQRLRQAAKKFTKVSFIDVAGDDQLINTHAR
LTLAPADLIRGLGAVVKAAALIKGVAVPAGLDSLNPCETAQKIAQSLVDGEKKAVFLGSV
AQQSGDAAQLQVLANELGKITGATVGFIGEAANSVGGYVAGALPGKLNARTMLEQPRQGY
LLLNAEPEFDFANAQQTLAALKQAKLVVFMSAFKHAPALEYADVMLPVAPFTETAGTFVN
AEGRVQSFNGVVRPLGEARPAWKIFRVLGNVLNLSGFDYESAEAVRDELLGQGTEFAAGL
DNGISGVNVALAPAPAGLQRVGDVPIHFADTLVRRAPSLLRTRDGQAPVARINGATAAQL
GLEEGAQVRVRQGDGTATLTLKLDEGTPAGCVRVPAAHAATAALGDLFGTITVERV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory