PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3057 (451 amino acids)

SeqID: Dsui_3057 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599943: phosphoglucosamine mutase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3057
MSRKYFGTDGVRGRVGEAPITPDFAMRLGYSAGQVLVAQDGLPAGERPAVLIGKDTRISG
YMLEAALEAGFSAAGVDVCLVGPMPTPAVAYLTRALRLQAGIVISASHNPFYDNGIKFFS
AQGTKLPDAVEHAIEAGVEAPMGCVPSDRLGKARRIDDARGRYIEFCKSTFPNDLDLRGL
KIVVDCAHGAAYHIAPDVFHELGADVVAIGNRPDGLNINAAVGATAPKALKEAVLGQRAD
LGIALDGDGDRLVMVDGEGNVYDGDQLLYAIVRGRQALGPVAGVAGTLMTNLALEDALKA
LDIPFARAAVGDRYVLEKLVQNGWLYGGENSGHILCLDRHTTGDGIIAALQVLAALRQQG
GSLKALLGDLVLYPQKLINVPMPKGFPWQDSPAIAAAQRAVEAELDGRGRVLLRASGTEP
LLRVMVEGRDGELIARLAEKLAGAVRQAVGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory