PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3153 (427 amino acids)

SeqID: Dsui_3153 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3153
MNAAIIFGLLLALMLTGMPISISLGLTVLTFLFTMTQVPIESVALKLFTGIEKFEIMAIP
FFILAGNFLTHGGVARRMINFASAMVGHFYGGLGLAGVLACALFAAVSGSSPATVVAIGS
ILLPAMVRAGFPNRFGAGVITTSGALGILIPPSIVMVMYSVATNTSVGALFMAGVIPGLL
LAFTLGMVTWYRAKKFDYPRMPKASWGERWVAFRKSVWGLMLIVIVMGGIYTGMFTPTEA
AAMSAVYAFIVAVFVYKDMGLKQIPKVLLDSANMSAMLLYIITNAVLFSFLMTNENIPQL
LAEWLLDKGLGPIAFLLAVNVLLLVAGNFMEPSSIVLIMAPILFPVAVKLGIDPVHFGIL
IVVNMEVGMCHPPVGLNLYVASGITKMGITELTIAVWPWLLSMLCFLGLVTYWPTLSLWL
PRTLGML

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory