PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3211 (448 amino acids)

SeqID: Dsui_3211 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        OuterMembrane                 [matched 37538304: NAD-specific glutamate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    OuterMembrane          4.74
    Cytoplasmic            4.28
    Periplasmic            0.37
    Extracellular          0.37
    CytoplasmicMembrane    0.24
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3211
MNDTLDSFLARLQLRDPQQPEFLQAVKEVLETLWPFLQENPRYRRLGLLDRIVEPERAIM
FRVPWVDDAGQVQVNRGYRIQMSSAIGPYKGGIRFHPSVNLSILKFLAFEQVFKNSLTTL
PMGGGKGGADFDPKGKSDLEVMRFCQAFMAELHKHIGADIDVPAGDIGVGGREVGYMFGM
YKKLEGEFSSVLTGKGLDYGGSLIRPEATGYGTIYFVENMLATRNMGLEGLRVTVSGSGN
VAQFAAQKAMRLGAKVISVSDSGGTVHDPDGMTEEKWSALHHIKEVQRGRVEDYARQFGL
TFLPGQRPWSIPCDVALPCATQNELDGNDARTLLQNGVRCVAEGANMPSTLEAVHAFLEA
GILYAPGKASNAGGVAVSGLEMSQNALRLSWTRDEVDQRLKQIMLSIHAACVGHGSGRGQ
RGSINYVAGANIAGFVKVADAMLAQGVV