PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3212 (555 amino acids)

SeqID: Dsui_3212 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3212
MEKIWLRSYPQGVPEFVDVNEFKSLGQLFEQSCAQYRDRVAYINMGVGITYGELDRLSRD
FAAYLQDVLKLPQGARVALMMPNLLQYPVCMFGALRAGYVVVNCNPLYTHRELEHQLKDS
GAEAIVIVENFAHTLEQALPLVPGLKHVIVTSLGDMLGALKGTVVNLVVRHVKKMVPAWK
LPRHVKFKAAMARGKGATLRPVQVGHEDIAYLQYTGGTTGVAKGAMLLHRNIIANLQQAH
AWIEPFLHKDQQLIITALPLYHIFSLTANCLTFLKIGATNVLITNPRDIPGFVKELAQYK
FTVITGVNTLFNALLNNPDFAKLDFSALRAALGGGMAVQKSVAQKWRQVTGKPLIEAYGL
TETSPAATINPLDLGEFNGAIGLPISSTEIVIRDDLGNDLPVGQAGEICIRGPQVMKGYW
LRPDETATVFYADGFLRTGDVGVMDEKGFVRIVDRKKDMILVSGFNVYPNEVEAVVAMHP
AVMEVAAVGVPSEHSGEAVKIFVVLKDKSVTKEQLIAHCKENLTGYKVPHLVEFRDDLPK
TNVGKILRRALKEAA