PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3481 (472 amino acids)

SeqID: Dsui_3481 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7404369: Fumarate hydratase class II]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3481
MNQPHRVEHDLLGDRKVPAEAYYGVHTLRAVENFPITGTPISIYPDLIRALAQIKLAAAK
ANEQLGLLEAPLAQAIVAACQEVIAGKLHEQFVVDVIQGGAGTSTNMNANEVIANRALEI
MGHAKGEYQHLHPNQHVNMSQSTNDVYPSALKLATYVGIFRLVDALAYLRRTFERKAEEF
KDVLKMGRTQLQDAVPMTLGQEFSTYAVMLGEDEERLKEAALLIREINLGATAIGTGINA
HPDYAPLVCRLLAETSGVPVITAPNLVEATQDCGSFVQLSGVLKRVAVKLSKTCNDLRLL
SSGPRAGFGEINLPPRQAGSSIMPGKVNPVIPEVVNQIAFEVIGNDQTVTFAAEAGQLQL
NAFEPIIAHSLFKSVNHLRQGCLTLADRCVDGITANRDALRARVENSIGIVTALNPYIGY
AAATSVAAEALESGKGVAEIVLARGLMSRAELDDVLRPEVLTQPRALPHRQG