PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0113 (541 amino acids)

SeqID: Echvi_0113 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0113
MTTLENPKEKHLELIQQLIEKTTRTKRGGGKQRIEKEHAKGKLTARERIDYLMDDPHDFL
EIGTFAADGMYQEEGGCPSAGVIMGLGKVSGRMCVVVANDATVKAGAWFPMTAKKNLRAQ
EIAMENRLPIIYLVDSAGVFLPMQNEIFPDKEHFGRQFRNNAKMSAMGIVQVAAIMGSCV
AGGAYLPIMSDEALIVDQTGSIFLAGSYLVKAAIGESVDNETLGGATTHCEISGVTDNKY
DNDEECLAAIKRIFETLGAPETAGFDRKPAKAPAVAPEKVFERFPVDRAKPYDMHGILET
LVDADSFDEYKPDFGQTLLCGTARIDGWAVGILANQRKMVKTKKGELQMGGVIYSDSADK
AARFIMNCNQRKVPLLFIQDVSGFMVGSRAEHGGIIKDGAKMVNAMANSVVPKFTVMIGN
AYGAGNYAMCGKAYDPRLIVSWPTAQMAVMSGTSAAKTLLQIKVASLKKEGKVITSEDEE
QLLKEITDKYEEELSPYYAAARLWVDEVISPLDTREIVSKGIAAADHAPIKDRFNVGVIQ
T