PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0200 (804 amino acids)

SeqID: Echvi_0200 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597444: 2-oxoisovalerate dehydrogenase (beta subunit)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0200
MIELETLPTHKVKLDLEKDQILFDYKIVQQSRQASLMGRKEVFMGKAKFGIFGDGKELAQ
VVMARYFKKGDWRSGYYRDQTFMLAIEELKLQEYFAQLYAHTVVEEEPASGGRLMNGHFA
TRSLNEDGTWKDIRNTKNSGGDISPTAGQVPRLIGLGYASKLFKENEALQRLEQFKGLGK
EIAWGTIGNASCAEGMFLETINAAGVLQIPLVLSVWDDDYGISVPNEFQTTKGSISEALA
GYQRTEEKPGVEIIVAKGWDYESLHAAYRKAETLAREASVPSLVHVIEMTQPQGHSTSGS
HERYKSKERLQWEADHDCNMMFRSYILENGLATEEELDEIDKEAVRFVREQKDKAWKSFT
EDIKSDLKTVVGLIKEAAGQSKQQNALNQLADDLAKTLNPIRKDVFGAVRKTLLLMRFDA
EEARGPLKAWYEEQKKRNYDRYNSHLYSESEEGSQHVQVIAPVYTEQSPTVDGREVLQAC
FDQMLSNDPRVFAFGEDVGKIGDVNQAFAGLQEKHGELRVTDTGIREMTIIGQGIGTALR
GLRPIAEIQYLDYIYYALMTLTDDLACLHYRTKGGQKAPMIVRTRGHRLEGVWHSGSPMS
AILGSLRGLLVCVPRNMTQAAGMYNTLLRSDEPALMIECLNAYRQKELMPTNVGEFTVPL
GRPEVLREGTDITVVTYGAMCRIVLDAAEQLVEYGVSVEVIDVQTLLPFDVDHVILESIK
KTSRVIFADEDVPGGASAYMMQQVLEKQKAYYQLDSEPVTLSAQPHRPAYSSDGDYFSKP
SVDDVIEKAYLIMHEVDPISYPMW