PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0221 (280 amino acids)

SeqID: Echvi_0221 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494014: Serine acetyltransferase, plasmid]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0221
MEYRKSFIKKIHDSHKQCPGCPSPRKVQEFFEGVLGVLFPEYAVKILKDTQEIEDKLKYY
EVQLQGILGKNKRLIDEESEAVAAAFFDRLSDVYDAIHEDIQAMFEGDPAAKSTTEVIRS
YPGFYAIAAYRIAHLLQEQGVSLIPRMITEFAHSKTGIDIHPGASIGRFFCIDHGTGVVI
GETTKIGDHVKLYQGVTLGALSVNKEDADIQRHPTIGDHVVIYAGATILGGKTVIGPESV
IGGNVWLTKSIPAKSKIYYQTKMYDASAETTDMYVFKNDA