PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0337 (399 amino acids)

SeqID: Echvi_0337 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129918: Phosphoglycerate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0337
MNSRIKSVDNLSFEGKRALVRVDFNVPLNANFEVTDDTRIQAALPTINKILNDGGAVILM
SHLGRPKGGPDEKFSLKHILLDLEKALDRPVKFAPDCIGEEAVQVAAALKGGEVLLLENL
RFYDEETKGDAGFAKKLAAMGDIYVNDAFGTAHRAHASTAIVAENFNDKVCGYLMLSELE
NADKVLGNPVRPLTAIMGGAKISDKILIIEKLLDKVDNLIIGGGMSYTFAKAKGGSIGDS
LLEADKMDLTKELEAKAKANGVNLYLPVDNITSKEFANDAEQGKAKSGEIPDGWMGLDIG
EETRKIFADVIKNSKTILWNGPMGVFEMESFDKGTKAVAEAVVAATKEGAFSLIGGGDSA
AAVNKFGFGEEVSFVSTGGGALLEYMEGKELPGVKALEP