PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0478 (636 amino acids)

SeqID: Echvi_0478 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0478
MIILLMGVSGSGKTTIGRMLSGKVGLPFYDADDFHPKNNVEKMKAGIPLNDQDRVPWLET
LSEKMVAWEENGGAILACSALKASYRKMLRSHAVQMRWFFLKGDEALIAKRMKAREGHYM
PASLLSSQLETLEPPKHATIISIDQTPENILEDIMSDLKNNKAVSSFGIIGMGVMGSSLA
LNLAEKDVKISVYNRTLQGVEEDVAQKLVDAHPEVKGILPFDKLDEFVESLEQPRKILMM
IPAGQIVDQQIARLLTFVDKGDVIIDGGNSFFEDSAKRQQYLQGYGIHFVGMGISGGRDG
ALKGPSLMPGGSEEGFELIKPYLEKIAGKDKGGKPCMHYVGPDGAGHFIKMVHNSIEYGE
IQVLAELYGFMRKGLGMSIEEMVKTFKTWSKEGADSYLMDATLAILSHEKDGKLLLDGIL
DVAGQTGTGGWAVSTAAKYGVPYAPLTAAVTARLVSTHKEARVSFAQTYPRKTDEIDQKE
IIDALKGAYDMARLVNHEIGFSLIKKVGEAEKWGLNMSEIARCWTNGSIIQSSLMEKLAG
VFKSTDCLMASAALKASFENGAKTLAEVVGAGLKAGIAMPVMSAAINFFYGMSSGQSSAN
LVQALRDCFGEHGYRLVDDVSGKIHRNKWRKSKEEA