PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0738 (452 amino acids)

SeqID: Echvi_0738 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0738
MKNLLQSFSSIKSLIKNIDFAKLNQLSQKVDLNEMVGIVSQMSESDLAKMMKMMKGGGKK
RELPPVNGDFYSLEKTLPPHEQEIVAKVRDFMEKEVRPIANEYWNKGHFPMHIIPKMAEL
GIAGLTYKGYGCPGHSALLEGFLAMEMARVDTSISTFFGVQSGLAMGSIYVCGSEEQKQE
WLPKMQKMDVIGAFGLTEPKVGSGVAGGLTTTCKREGDEWVINGQKKWIGNATFSDITVI
WARDLDDQQVKGFIVRKDNPGFHPEKIENKMALRTVQNALITMKDCRVPESDRLQNANSF
KDTSEILRLTRAGVAWQAVGCGRGAYEAALRYTNERKQFGRPIAGFQLVQDLLVTMLGDL
TAMQTMVYRLSKMQDAGELKDEHASLAKVFCTLRMRTIVDHSRELFGGNGILLEYDIARF
VADAEAIYSYEGTKEINSLIVGRAITGHSAFV