PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0770 (494 amino acids)

SeqID: Echvi_0770 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118676: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0770
MDLSGALKNNTFFVLGTLYLVLCSKPTNMTYDLIVIGSGPGGYVAAIRGAQLGMKTAIVE
KYPTLGGTCLNVGCIPSKALLDSSEHYHNAAHTFKTHGIDLKDLKVNLKQMISRKDDVVK
QNVDGISYLMKKNKIDVHQGVGSFVDKNTVKVTKDDGKSTEITGENIIIATGSKPASLPF
IEIDKKRVITSTEALKMKEVPKRMIVIGGGVIGMELGSVYARMGAKVSVVEFMDSLIPSM
DKTMGKELQKSLKKLGFEFYLKHKVTAVKSTAKEVTVTAENSKGEEVQVKGDYVLVSIGR
KPYTEGLNPEAAGVKVNDRGQVEVDEHLKTSADNIYAIGDVVKGAMLAHKAEEEGVLVAE
QLAGQKPHINYNLIPGVVYTWPEVAAVGYSEEQLKEKGIKYKTGKFPFMASGRARASMDT
DGLVKVLADAETDEILGVHMIGPRTADMIAEAVVAMEYRASAEDIARMSHAHPTYTEAFK
EACLAATENRALHV