PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0794 (529 amino acids)

SeqID: Echvi_0794 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1709485: Glycine betaine transporter opuD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0794
MLKKYFDVHAPVFWPASVLIIIFIAITLIVGEPMEKAFDAIKFFITDKTGWLFIIAINIF
IVFCFYLAFSKYGTIRLGGKDAETEFSTSAWFAMLFSAGMGIGLLFWGVAEPVSHYAKPP
YGEPFSIGSAQRGMNLTFLHWGFHAWAIYAVVALALAFFTFNRKLPLTIRSIFYPILGDR
IHGWIGDVIDVMAVLATLFGLATSLGFGVRQINGGLNYLFDVDISVTVQVLLISGITLMA
TASVFSGLDKGVRVLSEWNVRIAAALLIFVILAGPTVFIFRGFVQNLGNYLNQFIAVSTW
TEAYRDNEWQGTWTIFYWAWWVSWSPFVGMFIARISKGRTIREFILGVLLVPALLTFFWL
TAMGGSAIFMDMQNETHQFAKDIIKDESTALFVFLHEFPLSTLGSGIGVLLVMSFFVTSS
DSGSLVIDSITAGGKLDAPVGQRIFWALAEGTVAAVLLIGGGLTALQTATITTGLPFLIV
LLIMCFSLFRGLQKEHARKEALKQDINRKNYEKNLAEIIKKNLPKDSPK