PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1191 (595 amino acids)

SeqID: Echvi_1191 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81855910: Putative multidrug export ATP-binding/permease protein SAV1866]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1191
MAKKKKALEEHEKRKLNKKNLSKLIGIFNFVLPYKGIFIVGLIFLLFSSLTLLAFPYVAG
KLIDVAQGKKWMFSNINTIALVLIGILFVQSVFSFFRVWLFALVSERSMRDIRLSLYSRL
VNLPMSFFDKRRTGELISRITSDVSLLQDTFSVTLAELFRQIITLLAGTVFLFVTTPRLT
LFMLATFPVLVIIAMVFGKFIRKLSKETQDELAAANVIVEETLQSISTVKSFAGEAYEAA
RYGKGLNKVVKVALKAAGFRGAFISFIIFALFGGIVAVMWYGAMMVSTGAMSIGDLVSFV
LYTTFIGGSIAGLGDIYGQVQKAIGSSERVLEILDESPEESLADYQEVSIKGNVSFSDVS
FNYPTRPEADVLKHINISIQSGEKIALAGHSGAGKSTIIQLLMKFYTINFGEITIDDKPI
QNWNLKQLRSNIGIVPQEVLLFGGSIRENIAYAKPEATEQEIIEAAKKANAWQFIGKFPE
GLDTLVGERGIKLSGGQRQRIAIARAILKNPSILILDEATSSLDAESEALVQEALDELMK
NRTTIVIAHRLATIRKVDRIYVMKDGEIVEEGSHDDLAVQKGGFYANLVKLQFAE