PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1276 (308 amino acids)

SeqID: Echvi_1276 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 66774113: Dihydrodipicolinate synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1276
MKTIQPLPLPFRGIVPPMITPLADENQLDIPGLERLINHIIAGGVHGLFILGTTGESTSL
SYDIRHELVKRTCAIVNGRVPVLVGITDTAATESLRLADTAAKEGAAAVVAAPPYYFSLG
QPELIEYYEYLVERLSLPLFLYNMPSHTKIVIEPDTVKTLSQYDNIVGLKDSSANNAYFN
KVMAKMKDRQDFSLFVGPEEIMAETVLLGAHGGVNGGANMFPELYVKLYAAAESGDLETV
KRLHAIVMQISTKMYSLGQFGSSYLKGIKGALSLLGICSDYMASPLHRFREKEREILAEQ
LKEIQQQL