PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1296 FitnessBrowser__Cola:Echvi_1296 (513 amino acids)

SeqID: Echvi_1296 FitnessBrowser__Cola:Echvi_1296
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 81313488: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1296 FitnessBrowser__Cola:Echvi_1296
MNKEVRVRFAPSPTGALHIGGVRTALYNYLFAKKNQGKFLLRIEDTDQTRFVKGAEEYIK
EALEWIGITPDESPWKEGPHGPYRQSERKPLYMQYAMDLVEKGHAYYAFDTSEELDAMRE
RLTAARVVSPQYNSITRTQMKNSLTLPEDEVKARLESGDPYVIRLKVPRKEEIRLNDMIR
GWVMVHSNTLDDKVLMKSDGMPTYHLANIVDDHLMGITHVIRGEEWLPSAPIHVLLYRYL
GWEDTMPQFAHLPLLLKPDGNGKLSKRDADKNGFPIFPMDWTDPRTGDFSQGFRQAGYFP
DAFVNFLAFLGWNPGDNQEIFSMEELINAFSVERIGKSGTKFDINKAKWFNEQYLKAKSN
HDLAQYLIEDLKQEGIEILQAKAEQIVAIMKERATFPSDLWKEGRFMLIAPTEFDEKVAA
KKWNEDVVAVLTAYRDALDKFEGEFTPQSAKAMLESAAESQEIKLGKVMQAVRLAVTGVG
AGPDLMEIFTIIGKDELIKRIDFALNTLEVKAK