PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1439 (566 amino acids)

SeqID: Echvi_1439 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1439
MNLNIKATKENTYDAIVVGSGISGGWAAKELCEKGLKTLVLERGKNVEHIKGYPTTNLNP
WELDHRGWSTNESKEKHPIQSRCYAFGEDTQQFWVNDLENPYNEVKPFNWLRGYHVGGRS
LMWGRQCYRLSDIDFEANAKDGYGVDWPVRYKDLAPWYTYVEKFAGISGQAEGLPQLPDS
HFLPAMEMNCVEKHVAARVKEKFDDRIITIGRAAHATAALNGRGPCQYRNLCARGCPFGG
YFSSNSATLPAAMQTGNMTLRPFSIVTEVLYDKETGKANGVRIMDAETKEYTEYYAKVVF
LNASTLGTAWILLNSVSDAFPNGLGNGSEQVGHNLMDHHYGVGASGAIEGFGDKYYYGRR
PNGIYVPRFRNISEATERPDYVRGFGYQGGAGRGRGQGGPAGVGADFKLSKTQPSEDWSF
GIGSWGEHLPYYDNKVSLNHDKLDAYGLPTLDIDCEFKENEMAMRKDMRQSAVDILEAVG
AKNINSYDSAPPPGHCIHEMGTARMGKDPKTSVLNGYNQMHEVPNVYITDGAFMASSACQ
NPSLTYMAFTARACDHAVKELKKQNL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory