PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1497 (469 amino acids)

SeqID: Echvi_1497 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1497
MIQETVQAQKQKALKNQQSTLSSRIKKLEQLKEWIKSNQKEIEKALYADLRKPAAEVAVT
ETSFVVMEINAALKQLPKWTAPTKVGQPIHMLGTQAYLQAEPKGAVLIISPWNYPFNLSV
APLVSAIAAGCSACLKPSEHSPHTSALLRRMVTELFAVEDVTIFEGGVPVTSELLEQPFD
HIFFTGSTEVGKIVMKAAAKNLTSVTLELGGKSPAIIDQGFDLEDAAKKIAIGKFINSGQ
TCIAPDYLFVHESQKQDFIETLKAQVNRMYNANGKGFDRNPDYGRIIHAPHIVRLQNMLK
DAQTKGAHVEFGGKNSLDQQFMEPTVVSNVSEAMDLMKEEIFGPILPIITYHQLDDVIQL
IQLKPKPLAVYAFTTDDRIIEQLSKNTSSGALVINDCAIQFLHSELPFGGIGASGMGRSH
GHAGFLAFSNEKAILKQRTGKTLPKLLYPPYGLKTSGIIKAFMKWVMKG