PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1545 (384 amino acids)

SeqID: Echvi_1545 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506172: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1545
MRHTSRIEISKSAYRRNMKFIRSQVGDDTIVSAVIKGNAYGHGIENIIKIAENVGIRHFS
AFSTDEAKRVLQASEKNSDIMIMGMVDNQDLEWIIKHRISFFVFEFDRLMAAIKMAKKLH
IPAKIHVEVETGFHRTGFEWNEKEFLADVIYEHGIHLELTGLCTHFAGAESIANYLRVQN
QIKQYRNFKNWFDRHGIKFGTYHTACSAASLSYPETIMDMVRIGILQYGFWPSQETYMSK
FKELAAHRKNPLKRLISWKSSIMSIKEVGMGDFVGYGTTFMAHRPMRIALVPVGYCHGFS
RMLSNLGKVLIQGKMVSVVGTVTMNSISVDITDLKDVKKGDEVVIIGKQKNNEITVASFS
ETTQQVNYELLTRLPHDIPRKIVY