PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1839 (762 amino acids)

SeqID: Echvi_1839 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1839
MASDRAWLCPNFKIEMTTTKTPKILYTLTDEAPALATYSLLPIIKSFTDSAGVVVETRDI
SLSGRIIANFPEYLKEDQRIGDALAELGEIAKTPEANIVKLPNISASIPQLKAAIKELQE
KGYALPDYPDEPKDQEEKGVKAKYDKIKGSAVNPVLREGNSDRRAPQAVKQFARNNPHSM
GEWSADSKSHVASMSEGDFYGSEQSLTMSEAGTVKIQLEAGDGTVTVLKEGLELQEGEVI
DSSVMSVKKLQAFLAEQKADAKAKGILFSLHMKATMMKVSDPIIFGHAVKVFFAPVFEKH
AATIKKLGVDVNNGFGDLVSALEKLPADKRKEIEADIEACLADSPDLAMVNSHKGITNLH
VPSDVIIDASMPAMIRSSGQMWNKNDALQDTKAIIPDRSYAGVYQETIDFCKQHGAFDPT
TMGSVPNVGLMAQKAEEYGSHDKTFEAAADGAIKVLNAAGETLMEHKVEKGDIFRMCQTK
DAPIQDWVKLAVNRARSSNTPAVFWLDEHRAHDAQLIQKVNQYLPQHDTEGLDIRILSPV
EATRFSLERIKDGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGA
GGSAPKHVQQFVEEGHLRWDSLGEFLALAVSLEHLGETFDNNRAIVLGKTLDTATGKFLE
NGKSPSRKVNELDNRGSHFYLAMYWAEALANQDEDAALKEIFTKVAKAMIEKEEQVIAEL
NGAQGSPVDIGGYFKPAEDKTSKAMRPSQTLNGILEMVVASV