PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1891 (360 amino acids)

SeqID: Echvi_1891 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128794: molybdopterin synthase sulfurylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices: TMHMM

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1891
MNETRYQKQIRLKSFGKQSQDKLASSSVLIIGAGGLGTPVAQYLNGVGVGTLAIMDQDTV
AESNLARQTLFTPEDVGKHKTDVLIQYLRRQNPSTRFINVREFLTPVNALQELADYDLIV
DASDNFGTRYLVNDACVMLDKPFIYGALHEFEGQVSVMNYQNGPTYRCLFPEVGDPSAIL
NCDENGVLGILPGLIGTYQALEAVKVLTGIGEPLAGKLLIIDTLAQTHLKVGLTSVPENQ
SIRKLQENYGQPMCSTDLPVTSLTCEEFWSKREGDSQHQIIDVRNEGEFDSGHLDSAQNI
PLSQLTERHQEINEKAPVILICQSGKRSLQAAQLLQSLHPEQIIYNLEGGMNALEAEDWK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory