PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2056 (564 amino acids)

SeqID: Echvi_2056 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2056
MKDSRIRGAEIVIKSLVSENCDYIFGYPGGAIMPVYDALYDYADQIKHVLTRHEQGAIHA
AQGYARVSGKVGVCMATSGPGATNLITGIADALIDSTPLVCITGQVASALLGTDAFQETD
VVGFSMPGTKWNIQVRKAEDIAPAIAKGFHIARSGRPGPVLIDITKDAQNELADFNYVPC
LGIRSYRPYPKVKDSEIAAAAEVINAAKRPYLLFGQGVVIGKAEEELKAFLDKTGIPAAC
TLLGSGALSEEHPQFVGKLGMHGNYAPNILTNKCDVLIAVGMRFDDRVTGDLKRYAKQAK
VVHLELDNAEINKNVKCEVSVLGNCKESLPMLTEKVNKASHDEWLAEFRTLEEKEKSAVV
SLDLLPTKTGLTMGEVIRYINDYKKDDAVLVTDVGQHQMIAWRYFKFKTTRTQVTSGGLG
TMGFSLPAALGAQLADLNRQVVCVVGDGGIQMTVQELGTIMQTRSPVKVVLLNNNFLGMV
RQWQQLFFDKRYSFTELDNPDFIKIAEAYNMKATKVTERGDLSDAVADMLTHEGPYFLEV
VVEKEDNVFPMIPTGCSVEEVRLS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory