PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2097 (1029 amino acids)

SeqID: Echvi_2097 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2097
MKENKKKYWKGLEQLTNDPEFVKNADREFPEYLPIGGQQEGGASRRDFLKLMGFSLAAAS
LAACEAPVRKAIPYVNKPVDVNPSIPNYYASTFFGGGEYASVVVKTREGRPIKVDGNKLS
PVTKGGTSAIVEASVLSLYDKERLTSPYKNGEKSDWATIDKEVAAKLKAAGNVKVVTNTI
MSPSSEKALKALTDAIGGAEVITYDASSAYGIVKANQTYYGTAVLPNYSFDKADVIVSFG
ADFLGTWIAPIEYSKQYAQGRKISKEHPEMSRHFQFESNLSLTGANADYRTPIKASQSGL
AVLALYNLLAKKAGAPSVKAAGVEVAHLSKAANELWANRGKSLVVSGSNDPNVQVVINAI
NELLGNNNNTISYTKAVNFRQGDDAAIARFTKELASGRVGGVLFYNCNPVYDTPQGEALG
QAIAKAKVSVATNGTMDETASLVQYVAPDHHYLESWNDFHPKAGEYSLSQPAISPLFDTR
QAQESFLTWAGVPTNYYDFLQDNWKELYAGQSEITTFQEFWDRALYNGYYSTPLASETAE
LTPVGDVSSAAAAVNKSYSASSNGAELIIYQKIGIGDGTFANNPWLQEMSDPISKATWDN
YLTVSQKWANENGLKMVEGETKKAKITANGKSLIVPVLIQPGQADGTIGLALGYGRTKAG
RVANGVGVNAYQLLDNSKGFVNNEITSGVSIELTGDTYRIAQTQTHQTYMDRGNVIQEAT
LPEYKEDASAGREMPKIYKDGEFVKPSKISLWNGHKYSQHHWGLAIDMNSCVGCGACTVA
CQVENNVAVVGKEEVLNRREMAWIRIDRYYSSDAEAGDLEGLEKASDNPEVTFQPMMCQH
CNNAPCETVCPVAATTHSSEGLNQMTYNRCIGTRYCANNCPYKVRRFNWFKYHDNKDFSK
VNVAQNDDLGKMVLNPDVTVRARGVMEKCSMCVQRIQAGKLAAKRENRKVKDGEINVACA
VACSTDALVFGDLNDPKSKVSQMLKIEENTTSAVKEVNEERAYHVLEEINVSPNIWYFTK
IRNKDKNEA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory