PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2457 (365 amino acids)

SeqID: Echvi_2457 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123158: Histidine biosynthesis bifunctional protein hisB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2457
MKKVLFIDRDGTIIKEPPVDYQVDSLEKLEFYPKAISNLRKIAEETDYELVMVTNQDGLG
TDSFPEDTFWPAQYKMLKTLEEEGVVFSAIHIDKTFEHENAPTRKPRTGLLTDYLKGDYD
LAHSFVIGDRKTDVQLAKNLGTQAIFIGEEAAEGAALSTTSWDEIYEFLRLPSRIGQVKR
STSETQIEIMVNLDGSGKCQIDTGLPFFDHMLEQLGKHGGTDLDIKVNGDLHIDEHHTIE
DTALALGEAYLKALGDKKGIYRYGFLLPMDDVLAQVAIDFGGRPWMMWEAEFNREKIGDM
PTEMFYHFFKSFSDTAKCNLNIKAEGANEHHKIEAIFKGLARAIKMAVKRDIAALNQLPS
TKGVL