PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2491 (766 amino acids)

SeqID: Echvi_2491 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596923: periplasmic beta-glucosidase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2491
MKKYILFLMAIGGLMMAFKPSGKTPPPHHTDPYTQKADSVLALMTLEEKIGQLNLPAAGD
FTTGQASSSNIAEKIKAGKVGGLFNIKTVQKIRDVQRVAVEESRLGIPLLFGMDVIHGYE
TIFPIPLGLSSTWDMELIKKSAQLAAKEASADGINWTFSPMTDISRDPRWGRVSEGSGED
PYLGAQIAKAMVEGYQGDDLSLSHTLMACVKHFALYGAPEAGRDYNTVDMSRQRMYNEYF
PPYKAAVDAGVGTVMTAFNEVEGIPASANKWLMTEVLRNQWGFDGFVVTDYTAINEMTAH
GIGDLKTVSAKALKAGVDMDMVGEGFLSTLKASLEEGTITETQIDEACRRILVAKFKLGL
FEDPYRYCDAERAETEIFNAENRQLSREIAAQSFVLMKNEGQVLPLKKTGTIALIGPMAD
NAENMTGTWSVAGRFKESISLKQGIQHAVGDQVKIIEARGANIVADSLLESRVSVFGKPT
YRDQRPEEELIEEALEAAKAADVIVAAMGESAEMSGESSSRSTIELPENQRRLLKALAKT
GKPVVMVLFSGRPLAIQWEAEHIPSILNVWFGGSEAGDAIADVLFGEVNPSGKLTMTFPQ
NTGQIPLYYNHKNTGRPLPEGQWFQKFRSNFLDVPNAPLFPFGYGLSYTEFDYGDITLST
EKLSGHQTLYATITLTNAGRFDGKEVVQLYVRDMVGSMTRPVKELKGFQKVFLKAGETKE
VTFELTQEDLKFYNHDLDFVFEPGEFEIMIGTNSHDVSSMKVNWEE