PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2512 (339 amino acids)

SeqID: Echvi_2512 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129178: 3-deoxy-D-manno-octulosonate 8-phosphate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2512
MIIQVKQDITEVQKERLIKEINQIGYKITEVITQKGTYLVGIGSAEFDIRKFGHHEGIQD
IHIVSDAYKLVSRKWKVNPTSIDLGDGVYIKEGDMAVMAGPCSIESEEQIVKVIDHLKAN
NIKIMRGGVYKPRSSPYAFRGLGIEGLKLWHELASKAGIKIITEVMQVSQIEEMMDYVDV
FQVGARNTQNFNLLDELGKVDKPVMIKRGISGTIEELLQSAEYVFSGGNEKLILCERGIR
TYEKATRNTLDLNAVPVLKDKSHLPVVVDPSHGIGIRKFVHQMALAGVMAGADGIIYETH
EIPEKAYSDGQQTLDFAQSSQLASQIRKTFAMRKTFDLL