PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2531 (757 amino acids)

SeqID: Echvi_2531 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2531
MAFDIEMIKAVYAKYPERIAAARKTVGKPLTLAEKILYAHLWGGDATQAFERGKSYVDFA
PDRVAMQDATAQMALLQFMQAGKEKVAVPSTAHCDHLILAQKGAEEDLRSSLTASGEVFN
FLESVSNKYGIGFWKPGAGIIHQVVLENYAFPGGMMIGTDSHTVNAGGLGMVAIGVGGAD
AVDVMAGMPWELKFPKLIGVKLTGKMNGWTSAKDVILKVAGILTVKGGTGCIVEYFGEGA
KSLSATGKGTICNMGAEIGATTSTFGYDESMERYLRSTDRADVADLANEVKEHLTGDDEV
YANPEQYFDQVIEIDLSTLEPHINGPFTPDRATPVSQIRAEAEKNGWPTKVEWGLIGSCT
NSSYEDLSRASSIAQQAVDKQLKTKADFGINPGSEQVRFTAERDGMLKIFEDLDATIFTN
ACGPCIGQWARTGADKQEKNTIVHSFNRNFSKRADGNPNTHAFVTSPEMVAAIAISGDLG
FNPLTDTLTNANGEEVKLDPPKGEELPAKGFAVEDNGYQAPAEDGSGIEVKVNPDSKRLQ
LLTPFEPWDGKNITGAKLLIKAFGKCTTDHISMAGPWLRFRGHLDNISDNCLIGAVNAFN
EETNAVKSQLTGEYGPVPATQRAYKAAGIPTIVVGDHNYGEGSSREHAAMEPRHLGVKAV
LVKSFARIHETNLKKQGMLALTFDNEADYDKVQEDDTINFLDLDQFAPDKPLTLEFVHAD
GSKDVIVANHSYNDAQIKWFKAGSALNLIKEEQKKNA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory