PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2567 (559 amino acids)

SeqID: Echvi_2567 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2567
MKDFPWFKFYPKSVPQEVDVEAYSSVVGLFEESVQKYGEAVAYECMGKKISFHEVDRLSK
DFASYLQNELKLKKGDRIAIQMPNLLQYPVAMFGALRAGLIVVNTNPLYTPHEMEHQFKD
ADISAVVIVANFASNLEEILPRLDVKHIILTEIGDMLGGLKGGIVNLVVKYIKKMVPAYN
LPNAVKFNDALDIGSHLDLQPVTLDLNDTAYLQYTGGTTGVSKGAALTHGNIIANMQQIS
AWMRPKLKEGEELVITALPMYHIFALTVNCLAMLKIGAHNLLITNPRDMKAFCKDLRKHK
FSVITGVNTLFNGLLNQESFRNLDFSYLKISVGGGMAVQKYVAEKWNAVTGTPLAEGYGL
TETSPVACCNPIDGTERIGTIGLPLPNTEVKIIDDEGNELPNGEKGELCIKGPQVMKGYW
NKPKETNDVMLGEWLKTGDIGIITNDGFIKIVDRKKEMILVSGFNVYPNEVEDAIATHDK
VMEVGVIGMPDEHSTEKVIAYVVANDPSVTASEIIKHCRESLTNYKVPREVYFVDELPKS
NVGKILRRIIKEDHIKKSA