PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2850 (519 amino acids)

SeqID: Echvi_2850 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 113773: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2850
MRNLLRSFTYCTLVLLTASCMQDANEELEVKNYWPEAGITYEIFIQSFYDTDGDGIGDIN
GVTKKLDHVQELGANAIWFMPLMPSPSYHKYDVTDYKAIHPDYGTMDDFKQMLDEAHKRD
IKVVIDMIINHTSDEHPWFQEAKKGRDNPYRDYYVWAQYDTIQDYLDKKVVTLDSDNIRQ
WHDPGQGDDYYYGFFTGDMPDLNFDNPKVREEIYEIGRYWLAEVGVDGFRLDAAKHIYPD
DRAADSHEFWEEFRAEMEKVKPDVYLVGEVYDMKEVVAPYLTGLRALFNFDFHYTLLEAY
KKEDGMLLAKKQHDILAFYNGITDDFIDATISSNHDQPRLLNELGKSKDKLKQAIAILMT
MPGAPYIYYGEEIGMLGKKPDPNIREPFLWDVAEQDEGRTKWITPAFSTDNTVTPLAIQK
EDADSYFNHYKRVIQLRNTHPALAIGSLELPAEKYPKAVMAYQRKTGEQELYVFHNLGKK
SVEIPLPQGFDREVYHLKGAKVNGDKIKLPAFSSIVLGK