PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2964 (195 amino acids)

SeqID: Echvi_2964 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71152746: Serine acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2964
MELIKTKEDLNRVLKIEKAKLNIKRPFLMWISYSEGYRVYRFFKNLRYLEFYLNKKKNPW
DYLPLAWRYWNHRRMKLKFSFYIHPNTLGEGFHLVHSGFVRIAVFANIGKNCTVLPRVLI
GKKKPRIEDPRVLIGEDCYIGTGVTILGPIKIGNNVTIAAGSVVTHDVPDNCVIGGIPAK
IIKYKNSPDPVSSSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory