PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2982 (575 amino acids)

SeqID: Echvi_2982 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2982
MTDTSIITKAQSWLNSNIDQESKTKIQQLLDASDSSELVDAFYKDLEFGTGGLRGVMGIG
SNRMNVYTVGMATQGLANYLLACFPGEDIKVAITHDSRINNTLFAETTANVLTANGIKVK
YFEEMRPTPMLSYAIRHYGCKSGVMITASHNPKEYNGYKAYWEDGGQIVAPHDKNIIMEV
QKIKSIDDVKWDKNDALIEYIGAEMDLTYLNDIKKFSLSPKAILNQRDMCIVFSPIHGAS
GKMVPAALKTFGFENIHVVKEQEAPDGTFPTVVYPNPEEAEALSLSLKLAKEVNAELVLA
CDPDGDRYAAAIPNEKGEYELLNGNQTGSILTYYLLNQWREHGLFTGDQFMVNTIVTTEL
IEEICHGFNIPCYRVLTGFKNIAAIIRELEGKKQFVGGGEESYGFLVGDAVRDKDGVSAC
AMLAEVVAYYKEKGMTLFDVLAEIYQSYGFYKESLISVTKKGKDGAEQIQQLMHGFRTNR
PEAINGTKVVKVVDVKESKVYNIADGTEEDLDLDKSNVIQFYLEDGSKISARPSGTEPKI
KYYISVNESLPNRDAYRKVEASLAQKIEGLKKFFE