PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3057 (428 amino acids)

SeqID: Echvi_3057 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3057
MSEIAKLSFNGTEYELPVTEGTENEKAIEIAKLRGQSGLITLDPGFKNTGSTKSAITFLD
GEKGILRYRGYNIEDLAEKSNFLEVSYLLIYGELPTQEQYDQFANEITYHTLVHEDIKKI
LDGFPSVAHPMGVLSSLICSLTAFYPTSLDPNRTDEEIKLSIVRLMAKLPTFAAWAYKNK
MGHPANYPDNSLDYCSNFMKMMFALPAEKYEVDPIIAKALDKLLILHADHEQNCSTSTVR
IVGSSQASIYASISAGINALWGPLHGGANQSVIEMLEAIKEDGGDTKKYLDKAKDKNDPF
RLMGFGHRVYKNFDPRAKIIKKAADDVLGKLGVNDPVLEIAKELEEAALNDQYFVDRKLY
PNVDFYSGIIYRALGIPTDMFTVMFALGRLPGWIAQWKEMRENNEPIGRPRQVYTGPNER
SYVSMGDR